Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015913653.1_cds_XP_016463692.1_56790
CDS Infomation

[gene=LOC107786687] [db_xref=GeneID:107786687] [protein=protein CASP-like] [protein_id=XP_016463692.1] [location=join(13594..13684,14496..14606,14718..14896,23458..23607,25289..25377,25481..25590,25787..25881,26096..26151,26654..26819,31738..31830,32178..32306,32567..32737,34130..34237,34370..34513,34592..34693,35126..35205,35571..35663,35789..35849)] [gbkey=CDS]
Sequence

ATGGATCCCCAGGAAGGAGGATCGGAGAGAGATAAGGCAAAATCTACGACTTCTTCTACT
CCTCTCGCCGCTGTCTCTACCTACTGGAGAGACTTTGATTTAGAGAAAGAAAGGAGTATA
CTGGATGAACAAGGTCTTAGAATTGCTGAAAATCAAGATATCAGTCAGAAGAACCGCCGG
AAACTTGCGGAGAGCACTCGAGACTTTAAAAAGGCTTCAAAAGAAGACAAGTTGAGCTTA
TTTAACTCTTTGCTCAAGGGTTATCAAGAAGAGGTTGACAATCTTACAAAGAGAGCAAAA
TATGGGGAAAATGCTTTTCTTAACATTTATCAGAAACTTTATGAGGCACCAGATCCCTAC
CCGATTATTGCTTCTAGTGCTGAAAAGGATTCAAGGATATCAGAATTAGAATCTGAGAAT
CGAAAAATGAAGGTTGAGCTTGAAGAATTTCGCATGGAGGCAACTCACTTGAAAAATCAA
CAAGCAACAATAAGAAGACTTGAAGAGCGTTGCCGTCAGTTAGAACAACAGATGGAGGAG
AAAGTCAAGGAAGTTGTAGAAATTAAGCAACGCAGTTTGGCAGAAGAGAACCAGAAAACT
CTTGAGGTTTTAAAAGAAAGGGAACAACTATTGCAGGATCAATTACGGCAAGCACAAGAA
AGTGTTTCGACTATGCAAAAGTTGCATGAACTTGCACAGAGCCAGTTGTTTGAAGTCCAT
GCACAATCAGAGGGAGAGAGGGCAGCAAAGCAATCAGAAGTCAGCTTGTTAATGGATGAA
GTTGAACGGGCTCAGACTCGCCTTCTTAGTCTTGAAAGAGAAAAGGGATTGTTGCGCTCA
CAGTTACAGACGGCAAATGAAGATAATGATCACAAGAACAGCGATAATTTGGACGCAAAT
AGTGCTCTTGAGACTTCTCTGATTGCCAAGGAGAAGTTCATTTCTGAGCTAAATACAGAA
CTTCATAATTTGGAGAACACCTTATCAAATGAGCGAGAACAGCACATGAATGAGATAAAG
AAGTTGAATGCGCTGCTTAATGAAAAGGAAGTTGCTCTTGAGGAACTGAAGAAGGAACTT
CAAGCAAGGCCAACAACAAAGTTGATTGATGATTTGAGGAAGAAAGTTAAAATCTTACAG
GCAGTGGGTTACAATACAATTGAGGCTGAAGACTGGGAAGTTGCTACCAGTGGAGAAGAA
ATGAGCAAACTTGAGTCCTTACTTCTTGATAAGAATCGGAAAATGGAGCATGAGCTGACA
CAGTTAAAGTTCCAACTTTCTGAAAGGACGTCTTCATTGGAATCTTCTGAAGCCAAGATT
GTAGAATTAACTGCAAAGCTTAATGAACAACAACGATTAGTACAGAAGTTAGAGGATGAT
ATTCTAAAGGTTTGTGCAGTTTTCTCCCCTCCCATTCTCCCAAACCCAGGTTTGTTGGAT
AATGCAGAACAGAGGCATGTTTCATCAGACCAAGATCAAAACTCTATGCTTAAGGTGATT
TGCAACCAAAGAGACCGCTTCCGGGTTCGCTTGCAGGAAACTGAGGAGGAAATTAGACGG
CTGAACGAGAAGATAGGGGCGTTGACCTCAGAACTCGAAAAAACAAAAGCAGATAATGTC
AAACTTTACGGAAAGATCCGTTATGTTCAGGATTATAATTCTGAGAGAGTGATCTCAAGA
GGATCAAAGAAGTATGCAGAAGACCTAGAAAGTGGTTTCAGCTCAGATGTGGAATCCAAA
TACAAGAAGATGTATGAGGATGATATTAATCCATTTGCAGCATTCTCAAAGAAGGAAAGA
GACCAAAGATACAAGGAACTGGGTTTGAGAGACAAGATTACTCTCAGCAGTGGACGTTTT
CTTCTTGGTAACAAATATGCCCGTACCTTTGCATTCTTTTACACCATTGGGTTGCACATT
TTAGTGTTCACCTGCCTATACAGGATGTCAGCTTTGAGTAACCTCAGCCATGGATCTGAA
GAATCTTTTGTTGGAGACAAGACTATTAATCTTCCTCATGCCCTATAG

Peptide Sequence

PEP ID

XP_016463692.1
PEP Infomation

PREDICTED: protein CASP-like [Nicotiana tabacum]
Sequence

MDPQEGGSERDKAKSTTSSTPLAAVSTYWRDFDLEKERSILDEQGLRIAENQDISQKNRR
KLAESTRDFKKASKEDKLSLFNSLLKGYQEEVDNLTKRAKYGENAFLNIYQKLYEAPDPY
PIIASSAEKDSRISELESENRKMKVELEEFRMEATHLKNQQATIRRLEERCRQLEQQMEE
KVKEVVEIKQRSLAEENQKTLEVLKEREQLLQDQLRQAQESVSTMQKLHELAQSQLFEVH
AQSEGERAAKQSEVSLLMDEVERAQTRLLSLEREKGLLRSQLQTANEDNDHKNSDNLDAN
SALETSLIAKEKFISELNTELHNLENTLSNEREQHMNEIKKLNALLNEKEVALEELKKEL
QARPTTKLIDDLRKKVKILQAVGYNTIEAEDWEVATSGEEMSKLESLLLDKNRKMEHELT
QLKFQLSERTSSLESSEAKIVELTAKLNEQQRLVQKLEDDILKVCAVFSPPILPNPGLLD
NAEQRHVSSDQDQNSMLKVICNQRDRFRVRLQETEEEIRRLNEKIGALTSELEKTKADNV
KLYGKIRYVQDYNSERVISRGSKKYAEDLESGFSSDVESKYKKMYEDDINPFAAFSKKER
DQRYKELGLRDKITLSSGRFLLGNKYARTFAFFYTIGLHILVFTCLYRMSALSNLSHGSE
ESFVGDKTINLPHAL

Transcript Sequence

Gene sequence data has not been registered.